Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Lcho_3313PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RSc1241 putative rhizopine-binding precursor signal peptide protein. (309 aa)    
Predicted Functional Partners:
rbsA
ABC transporter-related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.992
Lcho_3311
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bmu:Bmul_1889 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 0.984
Lcho_2222
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: pna:Pnap_2604 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.881
Lcho_2210
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: vei:Veis_2121 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.868
Lcho_2209
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: vei:Veis_2122 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.867
Lcho_2211
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_2120 ABC transporter related.
 
 
 0.846
Lcho_4069
PAS/PAC sensor hybrid histidine kinase; KEGG: azo:azo2482 putative hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
   
 
 0.805
Lcho_3314
PFAM: PfkB domain protein; KEGG: bmu:Bmul_1892 PfkB domain protein.
 
  
 0.775
Lcho_3199
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_2253 ABC transporter-related protein.
 
 
 0.765
Lcho_0843
PFAM: inner-membrane translocator; KEGG: pde:Pden_1034 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.748
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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