STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3327PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmw:Mmwyl1_0023 binding-protein-dependent transport systems inner membrane component. (278 aa)    
Predicted Functional Partners:
Lcho_3328
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_0259 binding-protein-dependent transport systems inner membrane component.
 0.995
Lcho_3329
PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_00201 ABC-type sugar transport system, periplasmic component.
 
 0.990
Lcho_0892
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: csa:Csal_2614 ABC transporter related.
 0.979
Lcho_3244
PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; KEGG: bpm:BURPS1710b_A1185 maltose/maltodextrin import ATP-binding protein MalK.
 0.979
Lcho_0135
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: vei:Veis_3168 ABC transporter related.
 0.978
Lcho_3324
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: vei:Veis_0947 ABC transporter related.
 
 0.953
Lcho_3242
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO0271 putative binding-protein-dependent transport protein.
 
 0.910
Lcho_3300
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_377 ABC transporter sugar permease.
 
 0.908
Lcho_1692
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bte:BTH_I1556 maltose ABC transporter, ATP-binding protein, putative.
 
 0.901
Lcho_4322
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1109 binding-protein-dependent transport systems inner membrane component.
 
 
 0.901
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.