STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3335PFAM: peptidase M48 Ste24p; KEGG: dar:Daro_0246 peptidase M48, Ste24p. (474 aa)    
Predicted Functional Partners:
Lcho_3336
KEGG: dar:Daro_2990 hypothetical protein.
       0.748
Lcho_3337
PFAM: protein of unknown function DUF124; KEGG: mpt:Mpe_A2218 hypothetical protein.
       0.668
Lcho_3334
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dac:Daci_4337 short-chain dehydrogenase/reductase SDR.
  
    0.548
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
 
   0.500
Lcho_4052
KEGG: bvi:Bcep1808_7527 hypothetical protein.
  
   0.458
Lcho_0222
KEGG: pca:Pcar_1811 hypothetical protein.
   
 
 0.411
Lcho_2563
PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: mpt:Mpe_A2492 adenylate cyclase family 3-like protein.
 
     0.404
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.