STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3364Putative sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4-vinyl reductase 4VR; Activator of aromatic catabolism; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ajs:Ajs_0205 sigma54 specific transcriptional regulator, fis family. (585 aa)    
Predicted Functional Partners:
Lcho_2133
PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aav:Aave_2437 radical SAM N-terminal domain protein.
  
  
 0.895
Lcho_4370
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aav:Aave_0105 radical SAM domain protein.
  
  
 0.895
Lcho_3363
PFAM: Phenol hydroxylase subunit; KEGG: vei:Veis_2796 phenol hydroxylase subunit.
 
   
 0.830
Lcho_4225
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.804
Lcho_3365
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ajs:Ajs_0204 transcriptional regulator, GntR family.
 
     0.791
Lcho_3362
PFAM: methane/phenol/toluene hydroxylase; KEGG: vei:Veis_2795 methane/phenol/toluene hydroxylase.
 
   
 0.756
Lcho_3359
PFAM: Phenol hydroxylase conserved region; KEGG: vei:Veis_2792 phenol hydroxylase conserved region.
 
   
 0.741
Lcho_3361
PFAM: monooxygenase component MmoB/DmpM; KEGG: vei:Veis_2794 monooxygenase component MmoB/DmpM.
 
   
 0.736
Lcho_3358
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: vei:Veis_2791 oxidoreductase FAD/NAD(P)-binding domain protein.
 
   
 0.704
Lcho_3357
PFAM: ferredoxin; KEGG: vei:Veis_2790 ferredoxin.
 
   
 0.690
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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