STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3368KEGG: mpt:Mpe_A2635 putative transmembrane protein. (295 aa)    
Predicted Functional Partners:
Lcho_3367
PFAM: Rhodanese domain protein; KEGG: mpt:Mpe_A2636 3-mercaptopyruvate sulfurtransferase.
       0.805
Lcho_3366
PAS/PAC sensor hybrid histidine kinase; KEGG: dar:Daro_1441 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein.
 
    0.718
Lcho_2583
PFAM: protein of unknown function DUF6 transmembrane; KEGG: pol:Bpro_1004 putative transmembrane protein.
 
     0.588
Lcho_3369
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: aav:Aave_1298 glycerophosphoryl diester phosphodiesterase.
   
   0.537
Lcho_2351
TIGRFAM: EpsI family protein; KEGG: hch:HCH_03424 hypothetical protein.
  
     0.523
Lcho_2885
KEGG: nmu:Nmul_A2461 hypothetical protein.
  
   0.489
Lcho_1129
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: mpt:Mpe_A2027 N-acetylmuramoyl-L-alanine amidase.
   
    0.461
Lcho_2324
PFAM: protein of unknown function DUF1555; KEGG: dar:Daro_1502 protein of unknown function DUF1555.
  
     0.457
Lcho_2368
TIGRFAM: peptidyl-prolyl cis-trans isomerase, EpsD family; KEGG: mpt:Mpe_A0738 hypothetical protein.
  
     0.450
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.