STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3378KEGG: mes:Meso_1588 putative glucose/sorbosone dehydrogenase. (422 aa)    
Predicted Functional Partners:
Lcho_3377
PFAM: cytochrome c class I; KEGG: psa:PST_0367 hypothetical protein.
 
     0.901
Lcho_3111
PFAM: Sulphur oxidation protein SoxZ; KEGG: mpt:Mpe_A2085 hypothetical protein.
  
     0.597
Lcho_3116
KEGG: mpt:Mpe_A2188 hypothetical protein.
  
     0.595
Lcho_3112
KEGG: bxe:Bxe_B2422 hypothetical protein.
  
     0.585
Lcho_3106
TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: mpt:Mpe_A3393 putative methanol dehydrogenase protein, large subunit.
  
  
 0.502
Lcho_3114
KEGG: mpt:Mpe_A3014 MxaD protein.
  
     0.450
Lcho_3379
Putative phytochrome sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bbt:BBta_3626 putative sigma-54-dependent transcriptional regulator, HTH fis-type family.
  
    0.449
Lcho_3108
SMART: extracellular solute-binding protein family 3; KEGG: mpt:Mpe_A3395 MxaJ protein.
  
     0.443
Lcho_3113
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: mpt:Mpe_A3013 hypothetical protein.
  
     0.443
Lcho_3110
KEGG: mpt:Mpe_A3398 hypothetical protein.
  
     0.411
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.