STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3389KEGG: rfr:Rfer_2940 sulfate transporter/antisigma-factor antagonist STAS. (87 aa)    
Predicted Functional Partners:
Lcho_3390
PFAM: toluene tolerance family protein; KEGG: pol:Bpro_0797 toluene tolerance.
  
 
 0.979
Lcho_3392
PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_0795 mammalian cell entry related.
  
 0.941
Lcho_3394
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A3101 putative ABC transporter ATP-binding subunit.
  
 0.936
Lcho_3393
PFAM: protein of unknown function DUF140; KEGG: mpt:Mpe_A3100 hypothetical protein.
  
 0.922
Lcho_1712
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_2415 ABC transporter related.
  
 0.880
Lcho_0011
PFAM: Mammalian cell entry related domain protein; KEGG: aav:Aave_1818 mammalian cell entry related domain protein.
  
 0.873
Lcho_1711
PFAM: protein of unknown function DUF140; KEGG: sdn:Sden_0670 protein of unknown function DUF140.
  
 0.865
Lcho_0012
KEGG: pol:Bpro_2659 ABC-type transport system ipermease component.
  
 0.860
Lcho_3391
PFAM: VacJ family lipoprotein; KEGG: mpt:Mpe_A3098 putative lipoprotein.
     
 0.633
Lcho_3396
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: mpt:Mpe_A3103 glutamate synthase (ferredoxin).
       0.409
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.