STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3391PFAM: VacJ family lipoprotein; KEGG: mpt:Mpe_A3098 putative lipoprotein. (269 aa)    
Predicted Functional Partners:
Lcho_3392
PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_0795 mammalian cell entry related.
 
   
 0.957
Lcho_3390
PFAM: toluene tolerance family protein; KEGG: pol:Bpro_0797 toluene tolerance.
 
 
 
 0.936
Lcho_3393
PFAM: protein of unknown function DUF140; KEGG: mpt:Mpe_A3100 hypothetical protein.
 
   
 0.867
Lcho_3394
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A3101 putative ABC transporter ATP-binding subunit.
 
   
 0.828
Lcho_3389
KEGG: rfr:Rfer_2940 sulfate transporter/antisigma-factor antagonist STAS.
     
 0.633
Lcho_0713
KEGG: dac:Daci_5627 porin, gram-negative type.
   
 
 0.533
Lcho_2423
KEGG: dac:Daci_5627 porin, gram-negative type.
   
 
 0.533
Lcho_2566
PFAM: porin Gram-negative type; KEGG: ajs:Ajs_0134 porin, gram-negative type.
   
 
 0.533
Lcho_3412
KEGG: pol:Bpro_0746 outer membrane protein (porin)-like.
   
 
 0.533
Lcho_3484
PFAM: porin Gram-negative type; KEGG: slo:Shew_3260 porin, gram-negative type.
   
 
 0.533
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.