STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3402KEGG: dac:Daci_5576 hypothetical protein. (562 aa)    
Predicted Functional Partners:
Lcho_3404
PFAM: Pilus assembly protein PilP; KEGG: mpt:Mpe_A3110 fimbrial assembly protein.
 
     0.725
Lcho_3405
PFAM: Pilus assembly protein PilO; KEGG: mpt:Mpe_A3111 fimbrial assembly protein.
 
     0.722
Lcho_3403
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: mpt:Mpe_A3109 fimbrial biogenesis protein.
     
 0.675
Lcho_3406
PFAM: Fimbrial assembly family protein; KEGG: mpt:Mpe_A3112 fimbrial assembly protein.
       0.667
Lcho_3407
TIGRFAM: type IV pilus assembly protein PilM; KEGG: mpt:Mpe_A3113 fimbrial assembly protein.
       0.667
Lcho_3159
KEGG: pna:Pnap_0127 poly (3-hydroxybutyrate) depolymerase.
  
     0.632
Lcho_0756
PFAM: cell divisionFtsK/SpoIIIE; KEGG: mpt:Mpe_A1120 putative cell division FtsK transmembrane protein.
    
 
 0.626
Lcho_1939
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pau:PA14_37730 putative TonB dependent receptor.
  
 
 
 0.618
Lcho_3229
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_1136 TonB-dependent receptor.
  
 
   0.539
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.522
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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