STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3406PFAM: Fimbrial assembly family protein; KEGG: mpt:Mpe_A3112 fimbrial assembly protein. (212 aa)    
Predicted Functional Partners:
Lcho_3407
TIGRFAM: type IV pilus assembly protein PilM; KEGG: mpt:Mpe_A3113 fimbrial assembly protein.
 
 
 0.997
Lcho_3405
PFAM: Pilus assembly protein PilO; KEGG: mpt:Mpe_A3111 fimbrial assembly protein.
 
 
 0.996
Lcho_3404
PFAM: Pilus assembly protein PilP; KEGG: mpt:Mpe_A3110 fimbrial assembly protein.
 
 
 0.992
Lcho_3403
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: mpt:Mpe_A3109 fimbrial biogenesis protein.
 
 
 0.986
Lcho_0349
PFAM: Peptidoglycan-binding LysM; KEGG: mpt:Mpe_A0282 putative signal peptide protein.
  
 
   0.889
Lcho_3092
KEGG: dar:Daro_0889 hypothetical protein.
 
 
 0.832
Lcho_1679
KEGG: mpt:Mpe_A2160 putative transmembrane protein.
  
  
 0.821
Lcho_2909
KEGG: mms:mma_3355 type IV fimbrial biogenesis protein PilY1.
 
  
 0.817
Lcho_1880
PFAM: type IV pilus assembly PilZ; KEGG: mpt:Mpe_A1858 type IV pilus assembly protein.
  
   
 0.812
Lcho_2870
KEGG: mpt:Mpe_A1998 uncharacterized protein involved in fimbrial biogenesis; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
  
 0.795
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.