STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3419TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: mpt:Mpe_A3128 general secretion pathway protein G. (150 aa)    
Predicted Functional Partners:
Lcho_3423
PFAM: General secretion pathway protein K; KEGG: mpt:Mpe_A3132 general secretion pathway protein K.
 
 
 0.937
Lcho_3427
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: mpt:Mpe_A3136 general secretion pathway protein D.
  
 0.901
Lcho_3421
TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: mpt:Mpe_A3130 general secretion pathway protein I.
 
  
 0.889
Lcho_3420
KEGG: mpt:Mpe_A3129 general secretion pathway protein H.
  
  
 0.888
Lcho_3428
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.887
Lcho_3429
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: mpt:Mpe_A3138 general secretory pathway protein F.
 
  
 0.880
Lcho_3422
KEGG: mpt:Mpe_A3131 general secretion pathway protein J.
 
 
 0.864
Lcho_2614
PFAM: type II secretion system protein E; KEGG: rme:Rmet_4711 type II secretion system protein E.
 
 
 0.727
Lcho_3880
PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: tbd:Tbd_1295 type II secretion system protein.
 
 
 0.723
Lcho_1124
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: mpt:Mpe_A2969 type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB.
 
 
 0.692
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.