STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3428General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (471 aa)    
Predicted Functional Partners:
Lcho_3429
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: mpt:Mpe_A3138 general secretory pathway protein F.
 
 
 0.953
Lcho_3427
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: mpt:Mpe_A3136 general secretion pathway protein D.
 
  
 0.923
Lcho_3424
PFAM: General secretion pathway L; KEGG: mpt:Mpe_A3133 general secretion pathway protein L.
  
 
 0.913
Lcho_2613
PFAM: type II secretion system protein; KEGG: rme:Rmet_4712 type II secretion system protein.
 
 
 0.898
Lcho_3879
PFAM: type II secretion system protein; KEGG: tbd:Tbd_1294 type II secretion system protein F.
 
 
 0.898
Lcho_0549
PFAM: type II secretion system protein; KEGG: mpt:Mpe_A0508 pilus tip-associated protein.
 
 
 0.897
Lcho_3098
PFAM: type II secretion system protein; KEGG: dar:Daro_0880 type II secretion system protein.
 
 
 0.897
Lcho_3419
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: mpt:Mpe_A3128 general secretion pathway protein G.
 
 
 0.887
Lcho_0548
Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.841
Lcho_3426
KEGG: mpt:Mpe_A3135 general secretion pathway protein N.
 
  
 0.811
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.