STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3430KEGG: pin:Ping_2394 filamentous haemagglutinin family outer membrane protein; TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Ig family protein; filamentous haemagglutinin domain protein; SMART: Dystroglycan-type cadherin domain protein. (5613 aa)    
Predicted Functional Partners:
Lcho_3431
PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: mms:mma_1617 hemolysin activation/secretion signal peptide protein.
 
 
 0.883
Lcho_4094
PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: pna:Pnap_3704 polypeptide-transport-associated domain protein, ShlB-type.
 
 
 0.710
Lcho_4170
KEGG: tbd:Tbd_0934 hypothetical protein.
  
     0.575
Lcho_3740
KEGG: azo:azo2557 HlyD family secretion protein.
 
     0.479
Lcho_2094
TIGRFAM: outer membrane adhesin like proteiin; KEGG: prw:PsycPRwf_1167 putative outer membrane adhesin like proteiin.
 
 
 0.467
Lcho_3741
KEGG: azo:azo2558 membrane protein with HlyD domain.
  
   
 0.466
Lcho_1901
PFAM: lipolytic protein G-D-S-L family; KEGG: ajs:Ajs_2271 lipolytic enzyme, G-D-S-L family.
  
 
 0.465
Lcho_4028
KEGG: bch:Bcen2424_0149 hypothetical protein.
  
 
 0.465
Lcho_2249
KEGG: pol:Bpro_3782 hypothetical protein.
   
    0.459
Lcho_0632
PFAM: Hemolysin-type calcium-binding region; Na-Ca exchanger/integrin-beta4; KEGG: ret:RHE_CH00724 rhizobiocin/RTX toxin and hemolysin-type calcium binding protein.
 
  
 0.453
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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