STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3438KEGG: pna:Pnap_3611 hypothetical protein. (443 aa)    
Predicted Functional Partners:
Lcho_3437
PFAM: inner-membrane translocator; KEGG: aav:Aave_0784 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.936
Lcho_3436
PFAM: inner-membrane translocator; KEGG: pol:Bpro_0602 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.920
Lcho_3439
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0599 ABC transporter related.
 
  
 0.912
Lcho_3435
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0469 ABC transporter related.
 
  
 0.891
Lcho_3441
KEGG: ajs:Ajs_0464 putative phenylacetate-CoA ligase.
 
    0.877
Lcho_3434
PFAM: AMP-dependent synthetase and ligase; KEGG: pna:Pnap_3607 AMP-dependent synthetase and ligase.
 
    0.869
Lcho_4202
PFAM: thioesterase superfamily protein; KEGG: dac:Daci_5992 thioesterase superfamily protein.
  
     0.666
Lcho_0989
ABC transporter-related protein; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_0802 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.634
Lcho_3433
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pol:Bpro_0605 transcriptional regulator, Crp/Fnr family.
 
     0.609
Lcho_3440
KEGG: mpt:Mpe_A3142 hypothetical protein.
       0.496
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.