STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3455PFAM: inner-membrane translocator; KEGG: pol:Bpro_1485 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (306 aa)    
Predicted Functional Partners:
Lcho_3457
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0803 putative sugar ATP binding ABC transporter protein.
 
 0.993
Lcho_3453
PFAM: basic membrane lipoprotein; KEGG: aav:Aave_1135 basic membrane lipoprotein.
 
 
 0.977
Lcho_0562
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmw:Mmwyl1_0633 ABC transporter related.
 
 0.972
Lcho_3576
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_4427 ABC transporter related.
 
 0.972
Lcho_3022
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_B1372 ABC transporter, duplicated ATPase subunits.
 
 0.971
Lcho_3456
PFAM: inner-membrane translocator; KEGG: dac:Daci_2136 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.968
Lcho_3721
PFAM: basic membrane lipoprotein; KEGG: rfr:Rfer_3296 basic membrane lipoprotein.
 
 
 0.965
Lcho_3026
PFAM: basic membrane lipoprotein; KEGG: mpt:Mpe_A0769 bmp family protein.
 
 
 0.962
Lcho_0561
PFAM: basic membrane lipoprotein; KEGG: aha:AHA_0219 membrane lipoprotein.
 
 
 0.960
Lcho_3575
PFAM: basic membrane lipoprotein; KEGG: vei:Veis_4425 basic membrane lipoprotein.
 
 
 0.958
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.