STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3496KEGG: mpt:Mpe_A3231 hypothetical protein. (198 aa)    
Predicted Functional Partners:
Lcho_3495
PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: mpt:Mpe_A3232 hypothetical protein.
 
    0.854
Lcho_4009
KEGG: vei:Veis_1320 hypothetical protein.
  
     0.762
Lcho_0084
KEGG: aav:Aave_3831 restriction endonuclease.
  
     0.739
Lcho_0059
PFAM: metallophosphoesterase; KEGG: rfr:Rfer_3683 metallophosphoesterase.
  
     0.733
Lcho_3836
KEGG: mpt:Mpe_A3388 hypothetical protein.
  
    0.717
Lcho_0346
KEGG: mpt:Mpe_A0279 hypothetical protein.
  
     0.704
Lcho_0767
PFAM: HemY domain protein; KEGG: mpt:Mpe_A2999 putative porphyrin biosynthesis-related protein.
 
     0.699
ispE
4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
  
    0.699
Lcho_3433
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pol:Bpro_0605 transcriptional regulator, Crp/Fnr family.
 
     0.664
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
  
    0.663
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.