STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3505TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: AAA ATPase; KEGG: eba:ebA4256 general secretion pathway protein-related protein; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (831 aa)    
Predicted Functional Partners:
Lcho_3508
TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; KEGG: eba:ebA4249 polysaccharide chain length determinant protein.
 
   
 0.912
Lcho_3507
KEGG: dar:Daro_2399 probable exopolysaccharide biosynthesis protein.
 
   
 0.902
Lcho_3509
PFAM: polysaccharide export protein; KEGG: rfr:Rfer_0658 polysaccharide export protein.
 
   
 0.875
Lcho_3506
KEGG: dar:Daro_2400 hypothetical protein.
       0.816
Lcho_2352
Exosortase 2; TIGRFAM: eight transmembrane protein EpsH; exosortase 2; PFAM: Eight transmembrane protein EpsH; KEGG: nmu:Nmul_A0246 hypothetical protein.
 
    0.760
Lcho_0635
PFAM: glycosyl transferase group 1; KEGG: azo:azo3272 glycosyltransferase.
 
  
 0.662
Lcho_0641
TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: pau:PA14_23380 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.640
Lcho_3069
TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: dar:Daro_2440 UDP-glucose/GDP-mannose dehydrogenase:6-phosphogluconate dehydrogenase, NAD-binding; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.640
Lcho_3510
KEGG: azo:azo3193 glycosyltransferase; TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.635
Lcho_2366
TIGRFAM: chain length determinant protein EpsF; PFAM: lipopolysaccharide biosynthesis protein; KEGG: mpt:Mpe_A2733 chain length determinant protein.
 
   
 0.618
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.