STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3541KEGG: ajs:Ajs_3843 hypothetical protein. (198 aa)    
Predicted Functional Partners:
Lcho_3540
PFAM: protein of unknown function DUF6 transmembrane; KEGG: mpt:Mpe_A0184 hypothetical protein.
     
 0.802
Lcho_3539
Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: mpt:Mpe_A0186 valine-pyruvate aminotransferase.
 
     0.692
Lcho_3538
TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: mpt:Mpe_A0187 phenazine biosynthesis protein, PhzF family.
       0.617
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
       0.478
Lcho_4284
PFAM: DTW domain containing protein; KEGG: rfr:Rfer_3956 DTW.
  
     0.452
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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