STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3554PFAM: Invasion gene expression up-regulator SirB; KEGG: pol:Bpro_4728 invasion gene expression up-regulator, SirB. (133 aa)    
Predicted Functional Partners:
Lcho_3553
Putative sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: ajs:Ajs_0146 sigma54 specific transcriptional regulator, fis family.
       0.645
Lcho_3555
SMART: Water Stress and Hypersensitive response domain protein; KEGG: bte:BTH_I2944 hypothetical protein.
       0.620
prmC
protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
  
    0.452
Lcho_2124
PFAM: methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 12; KEGG: azo:azo3853 hypothetical protein.
  
    0.452
Lcho_3552
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
     0.449
Lcho_1485
KEGG: mpt:Mpe_A1702 putative NnrS family.
 
     0.445
Lcho_0647
KEGG: aeh:Mlg_0864 hypothetical protein.
  
     0.433
Lcho_1686
PFAM: Sporulation domain protein; KEGG: mpt:Mpe_A2153 DedD protein.
  
     0.402
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.