STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3555SMART: Water Stress and Hypersensitive response domain protein; KEGG: bte:BTH_I2944 hypothetical protein. (160 aa)    
Predicted Functional Partners:
Lcho_3882
KEGG: ppf:Pput_2291 hypothetical protein.
  
     0.658
Lcho_2616
KEGG: pfo:Pfl_1984 fimbrial assembly.
  
     0.635
Lcho_3554
PFAM: Invasion gene expression up-regulator SirB; KEGG: pol:Bpro_4728 invasion gene expression up-regulator, SirB.
       0.620
Lcho_3881
KEGG: tbd:Tbd_1296 hypothetical protein.
  
     0.550
Lcho_3885
Conserved hypothetical protein; KEGG: mfa:Mfla_2413 methylation.
  
     0.541
Lcho_3553
Putative sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: ajs:Ajs_0146 sigma54 specific transcriptional regulator, fis family.
       0.523
Lcho_2620
KEGG: rso:RS02978 putative general secretion pathway GspG related transmembrane protein.
  
     0.516
Lcho_3884
PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: tbd:Tbd_1300 type II secretion system protein D; Belongs to the bacterial secretin family.
  
     0.492
Lcho_3883
Hypothetical protein; KEGG: tbd:Tbd_1299 probable prolin-rich transmembrane protein.
  
     0.464
Lcho_0283
PFAM: protein of unknown function DUF748; KEGG: mpt:Mpe_A2234 hypothetical protein.
  
     0.443
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.