STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3556KEGG: vei:Veis_3393 hypothetical protein. (190 aa)    
Predicted Functional Partners:
Lcho_3559
KEGG: vei:Veis_3396 ABC-type metal ion transport system, periplasmic component/surface adhesin.
 
  
 0.958
Lcho_3558
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A1826 putative ATP-binding component of ABC transporter.
 
  
 0.937
Lcho_3557
PFAM: protein of unknown function DUF214; KEGG: mpt:Mpe_A1825 hypothetical protein.
 
     0.931
Lcho_3561
PFAM: ABC-3 protein; KEGG: cvi:CV_3065 high-affinity zinc transport system permease protein.
     
 0.553
Lcho_3560
PFAM: periplasmic solute binding protein; KEGG: mex:Mext_2875 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
       0.517
Lcho_0687
PFAM: protein of unknown function DUF599; KEGG: mpt:Mpe_A2884 hypothetical protein.
  
     0.448
Lcho_3562
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpe:BP3082 putative transport protein ATP-binding.
     
 0.440
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.