STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3565PFAM: 17 kDa surface antigen; KEGG: mpt:Mpe_A0169 hypothetical protein. (225 aa)    
Predicted Functional Partners:
Lcho_4252
PFAM: protein of unknown function DUF883 ElaB; KEGG: rfr:Rfer_2238 protein of unknown function DUF883, ElaB.
  
    0.594
fur-2
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: dac:Daci_4458 ferric uptake regulator, Fur family; Belongs to the Fur family.
       0.455
Lcho_3566
Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
  
    0.435
Lcho_4253
KEGG: rfr:Rfer_2237 putative transmembrane protein.
  
    0.431
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.424
Lcho_2510
SMART: helicase c2; KEGG: mpt:Mpe_A0909 hypothetical protein.
 
     0.406
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.