STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3571TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: dac:Daci_0813 phenylacetate-CoA oxygenase, PaaJ subunit. (183 aa)    
Predicted Functional Partners:
Lcho_3572
TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: dac:Daci_0812 phenylacetate-CoA oxygenase, PaaI subunit.
 
 
 0.998
Lcho_3573
TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: dac:Daci_0811 phenylacetate-CoA oxygenase, PaaH subunit.
 
 
 0.998
Lcho_3574
TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: dac:Daci_0810 phenylacetate-CoA oxygenase, PaaG subunit.
 
 
 0.998
Lcho_3569
TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mpt:Mpe_A0991 putative ring-hydroxylation complex protein 4.
 
 
 0.994
Lcho_2404
TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: azo:azo0302 phenylacetic acid degradation protein PaaI.
 
 
 0.985
Lcho_2405
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: vei:Veis_3942 enoyl-CoA hydratase/isomerase.
 
 
 0.977
Lcho_2403
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
  
 0.966
Lcho_3568
TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: MaoC domain protein dehydratase; Aldehyde Dehydrogenase_; KEGG: pfl:PFL_3140 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase.
 
  
 0.946
Lcho_3212
KEGG: rfr:Rfer_2239 coenzyme F390 synthetase-like.
    
 0.917
Lcho_3441
KEGG: ajs:Ajs_0464 putative phenylacetate-CoA ligase.
    
 0.917
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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