STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3585Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: ajs:Ajs_3105 putative transcriptional regulator, Crp/Fnr family. (215 aa)    
Predicted Functional Partners:
Lcho_0755
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mpt:Mpe_A1119 catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein).
  
  
  0.940
Lcho_4140
PFAM: cyclic nucleotide-binding; KEGG: dac:Daci_5739 cyclic nucleotide-binding protein.
  
  
  0.938
Lcho_0179
PFAM: cyclic nucleotide-binding; KEGG: mpt:Mpe_A3813 cAMP-dependent protein kinase - catabolite gene activator and regulatory subunit.
  
  
  0.918
Lcho_4099
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pol:Bpro_4219 transcriptional regulator, Crp/Fnr family.
  
  
 
0.914
Lcho_2391
PFAM: cyclic nucleotide-binding; KEGG: afw:Anae109_3203 cyclic nucleotide-binding protein.
     
  0.900
Lcho_3433
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pol:Bpro_0605 transcriptional regulator, Crp/Fnr family.
     
  0.900
Lcho_2563
PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: mpt:Mpe_A2492 adenylate cyclase family 3-like protein.
 
 
 0.552
Lcho_4069
PAS/PAC sensor hybrid histidine kinase; KEGG: azo:azo2482 putative hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
   
 
 0.449
Lcho_4100
PFAM: Tetratricopeptide TPR_4; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bbt:BBta_6648 putative adenylate cyclase.
   
 0.443
ntrC
Nitrogen metabolism transcriptional regulator, NtrC, Fis Family; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
   
 
 0.439
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.