STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3590PFAM: AMP-dependent synthetase and ligase; KEGG: pna:Pnap_3282 AMP-dependent synthetase and ligase. (547 aa)    
Predicted Functional Partners:
Lcho_3596
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: azo:azo1702 probable acyl-CoA dehydrogenase.
 
 
 0.782
Lcho_3591
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_3520 ABC transporter-related protein.
       0.757
Lcho_3592
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo0118 ABC transporter ATP-binding protein.
       0.757
Lcho_3593
KEGG: azo:azo0119 probable ABC transporter substrate binding protein.
 
     0.650
Lcho_1462
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rfr:Rfer_3858 respiratory-chain NADH dehydrogenase domain, 51 kDa subunit.
    
 
 0.649
Lcho_2538
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_2808 acyl-CoA dehydrogenase domain protein.
 
 
 0.601
Lcho_0987
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: dac:Daci_2761 acyl-CoA dehydrogenase domain protein.
 
 
 0.595
Lcho_4032
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mpt:Mpe_A0419 putative acyl-CoA dehydrogenase oxidoreductase protein.
 
 
 0.590
Lcho_3589
KEGG: pna:Pnap_3281 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein.
 
   
 0.581
Lcho_3594
PFAM: inner-membrane translocator; KEGG: eba:ebA3426 probable transmembrane ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
       0.572
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.