STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3593KEGG: azo:azo0119 probable ABC transporter substrate binding protein. (403 aa)    
Predicted Functional Partners:
Lcho_3594
PFAM: inner-membrane translocator; KEGG: eba:ebA3426 probable transmembrane ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.960
Lcho_3595
PFAM: inner-membrane translocator; KEGG: azo:azo0121 putative branched-chain amino acid transport permease; Belongs to the binding-protein-dependent transport system permease family.
 
    0.960
Lcho_3591
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_3520 ABC transporter-related protein.
 
    0.938
Lcho_3592
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo0118 ABC transporter ATP-binding protein.
 
    0.921
Lcho_3590
PFAM: AMP-dependent synthetase and ligase; KEGG: pna:Pnap_3282 AMP-dependent synthetase and ligase.
 
     0.650
Lcho_0989
ABC transporter-related protein; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_0802 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.634
Lcho_3596
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: azo:azo1702 probable acyl-CoA dehydrogenase.
       0.599
Lcho_3597
PFAM: MaoC domain protein dehydratase; KEGG: pna:Pnap_3284 MaoC domain protein dehydratase.
       0.566
Lcho_3598
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dac:Daci_2390 electron transfer flavoprotein alpha/beta-subunit.
       0.535
Lcho_3599
PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: mpt:Mpe_A1297 electron transfer flavoprotein alpha-subunit.
       0.535
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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