STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3595PFAM: inner-membrane translocator; KEGG: azo:azo0121 putative branched-chain amino acid transport permease; Belongs to the binding-protein-dependent transport system permease family. (311 aa)    
Predicted Functional Partners:
Lcho_3594
PFAM: inner-membrane translocator; KEGG: eba:ebA3426 probable transmembrane ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
Lcho_3593
KEGG: azo:azo0119 probable ABC transporter substrate binding protein.
 
    0.960
Lcho_3652
PFAM: inner-membrane translocator; KEGG: pna:Pnap_2951 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.952
Lcho_1204
PFAM: inner-membrane translocator; KEGG: pna:Pnap_2713 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.951
Lcho_3591
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_3520 ABC transporter-related protein.
  
 0.948
Lcho_3592
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo0118 ABC transporter ATP-binding protein.
  
 0.935
Lcho_0793
PFAM: inner-membrane translocator; KEGG: pol:Bpro_0987 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.934
Lcho_1850
PFAM: inner-membrane translocator; KEGG: mpt:Mpe_A1771 putative amino acid transmembrane transmembrane protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.912
Lcho_0759
PFAM: inner-membrane translocator; KEGG: mpt:Mpe_A1123 putative amino-acid transmembrane ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.875
Lcho_1852
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A1773 putative amino-acid ATP-binding ABC transporter protein.
  
 0.847
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.