STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3597PFAM: MaoC domain protein dehydratase; KEGG: pna:Pnap_3284 MaoC domain protein dehydratase. (158 aa)    
Predicted Functional Partners:
Lcho_3213
PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: eba:ebA5073 putative poly-beta-hydroxyalkanoate synthase.
 
  
 0.948
Lcho_2087
TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: mpt:Mpe_A1870 putative poly-beta-hydroxybutyrate polymerase transmembrane protein.
 
  
 0.941
Lcho_4207
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rme:Rmet_0108 acyl-CoA dehydrogenase-like protein.
  
 0.927
Lcho_2085
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dac:Daci_3602 acetoacetyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 0.915
Lcho_2993
Vinylacetyl-CoA Delta-isomerase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: mpt:Mpe_A2516 vinylacetyl-CoA delta-isomerase.
    
  0.904
Lcho_3596
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: azo:azo1702 probable acyl-CoA dehydrogenase.
 
 0.828
Lcho_3599
PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: mpt:Mpe_A1297 electron transfer flavoprotein alpha-subunit.
  
 
 0.775
Lcho_3598
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dac:Daci_2390 electron transfer flavoprotein alpha/beta-subunit.
  
 
 0.756
Lcho_4379
Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
   
 0.625
Lcho_3595
PFAM: inner-membrane translocator; KEGG: azo:azo0121 putative branched-chain amino acid transport permease; Belongs to the binding-protein-dependent transport system permease family.
       0.620
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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