STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3609KEGG: pna:Pnap_1209 alkaline phosphatase. (582 aa)    
Predicted Functional Partners:
Lcho_0946
Alkaline phosphatase; KEGG: mpt:Mpe_A3516 phosphodiesterase/alkaline phosphatase D.
  
  
 
0.926
Lcho_1830
PFAM: GTP cyclohydrolase I; KEGG: mpt:Mpe_A1074 GTP cyclohydrolase I.
    
 0.920
Lcho_0102
KEGG: reh:H16_A0259 dihydroneopterin aldolase.
     
 0.912
Lcho_3146
PFAM: dihydroneopterin aldolase; KEGG: mpt:Mpe_A2613 dihydroneopterin aldolase-like protein.
     
 0.912
Lcho_4015
PFAM: NUDIX hydrolase; KEGG: mpt:Mpe_A1071 putative dATP pyrophosphohydrolase.
     
  0.900
Lcho_3369
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: aav:Aave_1298 glycerophosphoryl diester phosphodiesterase.
 
  
 0.593
Lcho_3608
PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A1454 hypothetical protein.
  
    0.529
Lcho_3645
PFAM: cytochrome P450; KEGG: pna:Pnap_4029 cytochrome P450.
  
   
 0.518
Lcho_3610
Adenylate cyclase; PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: aci:ACIAD1197 hypothetical protein.
       0.508
Lcho_1652
PFAM: protein of unknown function DUF839; KEGG: pol:Bpro_1725 twin-arginine translocation pathway signal.
 
  
 0.453
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.