STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3621KEGG: afw:Anae109_4197 hypothetical protein. (332 aa)    
Predicted Functional Partners:
Lcho_3623
PFAM: glycosyl transferase family 39; KEGG: azo:azo2162 conserved hypothetical protein, similar to glycosyltransferases.
 
  
 0.953
Lcho_3620
PFAM: phosphoesterase PA-phosphatase related; KEGG: azo:azo2159 conservd hypothetical membrane protein.
 
  
 0.939
Lcho_3622
PFAM: glycosyl transferase family 2; KEGG: afw:Anae109_4198 glycosyl transferase family 2.
 
  
 0.938
Lcho_3625
PFAM: phosphoesterase PA-phosphatase related; KEGG: azo:azo2163 hypothetical protein.
 
     0.934
Lcho_3624
KEGG: azo:azo2314 glycosyltransferase.
 
  
 0.932
Lcho_3336
KEGG: dar:Daro_2990 hypothetical protein.
  
     0.694
Lcho_3619
PFAM: metallophosphoesterase; KEGG: ajs:Ajs_1203 metallophosphoesterase.
       0.554
Lcho_1797
KEGG: mpt:Mpe_A2591 hypothetical protein.
  
     0.545
Lcho_4016
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mpt:Mpe_A1072 hypothetical protein.
  
  
 0.499
Lcho_1649
PFAM: beta-lactamase domain protein; KEGG: mpt:Mpe_A2919 beta-lactamase related protein.
  
     0.495
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.