STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3657KEGG: reh:H16_B1916 hypothetical protein. (154 aa)    
Predicted Functional Partners:
Lcho_3653
PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0214 extracellular ligand-binding receptor.
 
     0.904
Lcho_3654
PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_0215 alpha/beta hydrolase.
 
     0.901
aroK-2
Transcriptional regulator, XRE family with shikimate kinase activity; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
     0.900
Lcho_3655
TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_0216 benzoate-CoA ligase family.
 
     0.886
Lcho_3659
TIGRFAM: benzoyl-CoA-dihydrodiol lyase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_1628 enoyl-CoA hydratase.
 
     0.858
Lcho_3656
PFAM: Aldehyde Dehydrogenase_; KEGG: pna:Pnap_2947 aldehyde dehydrogenase.
 
     0.849
Lcho_3660
KEGG: reh:H16_B1913 benzoyl-CoA dioxygenase B.
 
     0.828
Lcho_3661
TIGRFAM: benzoyl-CoA oxygenase/reductase, BoxA protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pna:Pnap_2942 oxidoreductase FAD/NAD(P)-binding domain protein.
 
     0.809
Lcho_1779
PFAM: Extracellular ligand-binding receptor; KEGG: reh:H16_A1414 ABC-type transporter, periplasmic component.
 
     0.724
Lcho_0991
PFAM: Extracellular ligand-binding receptor; KEGG: pna:Pnap_0800 extracellular ligand-binding receptor.
  
     0.661
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.