STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3687PFAM: inner-membrane translocator; KEGG: pol:Bpro_1849 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (291 aa)    
Predicted Functional Partners:
Lcho_3688
PFAM: inner-membrane translocator; KEGG: pna:Pnap_1652 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
Lcho_3689
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_1653 ABC transporter related.
 
  
 0.957
Lcho_3690
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1852 ABC transporter related.
 
  
 0.943
Lcho_3686
PFAM: Extracellular ligand-binding receptor; KEGG: pna:Pnap_1650 extracellular ligand-binding receptor.
 
  
 0.929
Lcho_0760
PFAM: inner-membrane translocator; KEGG: pol:Bpro_3795 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.911
Lcho_0761
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A1125 putative ABC transporter ATP-binding protein.
 
  
 0.876
Lcho_0792
PFAM: inner-membrane translocator; KEGG: pol:Bpro_0988 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.857
Lcho_1214
PFAM: Extracellular ligand-binding receptor; KEGG: pna:Pnap_1650 extracellular ligand-binding receptor.
 
  
 0.856
Lcho_1205
PFAM: inner-membrane translocator; KEGG: pna:Pnap_2714 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.855
Lcho_3651
PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0212 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.854
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.