STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3698PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit; KEGG: bra:BRADO2379 protocatechuate 4,5-dioxygenase (4,5-PCD), alpha chain. (120 aa)    
Predicted Functional Partners:
Lcho_3699
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: bbt:BBta_2734 2,3-dihydroxyphenylpropionate 1,2-dioxygenase.
 
  
  0.994
Lcho_3635
PFAM: amidohydrolase 2; KEGG: pna:Pnap_2029 amidohydrolase 2.
 
  
 0.979
Lcho_3637
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: azo:azo2537 protocatechuate 4,5-dioxygenase.
 
  
  0.977
Lcho_3638
PFAM: oxidoreductase domain protein; KEGG: dac:Daci_4444 oxidoreductase domain protein.
 
  
 0.977
Lcho_3636
Protocatechuate 4,5-dioxygenase, alpha subunit; KEGG: pna:Pnap_2028 protocatechuate 4,5-dioxygenase; TIGRFAM: protocatechuate 4,5-dioxygenase, alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit.
 
 
0.974
Lcho_1335
PFAM: Rieske [2Fe-2S] domain protein; KEGG: bvi:Bcep1808_3498 vanillate monooxygenase.
 
  
 0.962
Lcho_0441
KEGG: rpe:RPE_3808 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding.
 
 
 0.945
Lcho_1334
Phthalate 4,5-dioxygenase; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pna:Pnap_2724 ferredoxin.
  
  
 0.927
Lcho_0120
PFAM: intradiol ring-cleavage dioxygenase; KEGG: pol:Bpro_3458 intradiol ring-cleavage dioxygenase.
     
 0.906
Lcho_3632
PFAM: amidohydrolase 2; KEGG: dac:Daci_4449 amidohydrolase 2.
 
   
 0.800
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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