STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3752TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rme:Rmet_1514 phosphoglycolate phosphatase. (237 aa)    
Predicted Functional Partners:
Lcho_0590
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mpt:Mpe_A0658 haloacid dehalogenase-like hydrolase.
  
  
 
0.923
Lcho_3767
PFAM: ribulose bisphosphate carboxylase large chain; KEGG: pna:Pnap_1978 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family.
    
 0.918
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
  
  
 
0.918
Lcho_4179
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: mpt:Mpe_A0213 putative 2-hydroxyacid dehydrogenase in PhoH-CsgG intergenic region.
    
 0.905
Lcho_1170
PFAM: FAD linked oxidase domain protein; biotin/lipoate A/B protein ligase; KEGG: mpt:Mpe_A3638 putative glycolate oxidase (FAD-linked subunit) oxidoreductase protein.
    
 0.904
Lcho_1171
PFAM: FAD linked oxidase domain protein; KEGG: mpt:Mpe_A3639 FAD linked oxidase.
    
 0.904
Lcho_3259
PFAM: FAD linked oxidase domain protein; KEGG: mpt:Mpe_A3639 FAD linked oxidase.
    
 0.904
Lcho_3260
PFAM: FAD linked oxidase domain protein; KEGG: ajs:Ajs_0425 FAD linked oxidase domain protein.
    
 0.904
Lcho_1172
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: mpt:Mpe_A3640 glycolate oxidase iron-sulfur subunit.
    
 0.903
Lcho_3258
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: mpt:Mpe_A3640 glycolate oxidase iron-sulfur subunit.
    
 0.903
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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