STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3767PFAM: ribulose bisphosphate carboxylase large chain; KEGG: pna:Pnap_1978 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family. (460 aa)    
Predicted Functional Partners:
Lcho_0590
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mpt:Mpe_A0658 haloacid dehalogenase-like hydrolase.
 
  
 0.922
Lcho_3752
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rme:Rmet_1514 phosphoglycolate phosphatase.
    
 0.918
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.918
Lcho_3754
PFAM: phosphoribulokinase/uridine kinase; KEGG: rfr:Rfer_1392 phosphoribulokinase.
 
 
 0.903
Lcho_3765
PFAM: von Willebrand factor type A; KEGG: pna:Pnap_1976 von Willebrand factor, type A.
 
   
 0.880
Lcho_3766
CbbQ/NirQ/NorQ domain protein; PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: pna:Pnap_1977 CbbQ/NirQ/NorQ C-terminal domain protein.
 
   
 0.744
Lcho_3750
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mpt:Mpe_A1484 haloacid dehalogenase.
 
   
 0.722
Lcho_0435
PFAM: transferase hexapeptide repeat containing protein; KEGG: rme:Rmet_1059 transferase hexapeptide repeat.
    
 
 0.660
Lcho_1164
KEGG: pol:Bpro_3188 transferase hexapeptide repeat.
    
 
 0.660
Lcho_2406
TIGRFAM: phenylacetic acid degradation protein PaaY; KEGG: mpt:Mpe_A0983 transferase.
    
 
 0.660
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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