STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3774PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dar:Daro_3126 YeeE/YedE. (374 aa)    
Predicted Functional Partners:
Lcho_0063
KEGG: bja:bll2732 putative cytochrome c.
 
  
 0.770
Lcho_0064
PFAM: Sulphur oxidation protein SoxZ; KEGG: bja:bll2733 probable sulfur oxidation protein.
 
     0.769
Lcho_3772
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: mpt:Mpe_A2429 putative sulfide dehydrogenase flavocytochrome c oxidoreductase protein.
 
     0.768
Lcho_0065
KEGG: bbt:BBta_2763 sulfur oxidation protein SoxY.
 
     0.757
Lcho_3778
PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: mpt:Mpe_A2432 putative sulfur oxidation signal peptide protein; Belongs to the 5'-nucleotidase family.
 
     0.757
Lcho_3784
PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: mpt:Mpe_A2438 putative sulfite oxidase molybdopterin subunit.
 
   
 0.749
Lcho_0066
KEGG: bbt:BBta_2764 putative cytochrome c, putative SoxX protein.
  
     0.747
Lcho_3782
KEGG: mpt:Mpe_A2436 hypothetical protein.
 
     0.735
Lcho_3781
PFAM: Sulphur oxidation protein SoxZ; KEGG: mpt:Mpe_A2435 hypothetical protein.
 
     0.730
Lcho_3711
SMART: Rhodanese domain protein; KEGG: dar:Daro_1929 rhodanese-like.
 
    0.728
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.