STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3783PFAM: cytochrome c class I; KEGG: mpt:Mpe_A2437 diheme cytochrome c SoxD. (355 aa)    
Predicted Functional Partners:
Lcho_3784
PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: mpt:Mpe_A2438 putative sulfite oxidase molybdopterin subunit.
 
 
 
 0.971
Lcho_3367
PFAM: Rhodanese domain protein; KEGG: mpt:Mpe_A2636 3-mercaptopyruvate sulfurtransferase.
     
  0.900
Lcho_3779
KEGG: pol:Bpro_2626 hypothetical protein.
 
  
 0.897
Lcho_3782
KEGG: mpt:Mpe_A2436 hypothetical protein.
 
     0.878
Lcho_3781
PFAM: Sulphur oxidation protein SoxZ; KEGG: mpt:Mpe_A2435 hypothetical protein.
 
     0.870
Lcho_3780
KEGG: mpt:Mpe_A2434 hypothetical protein.
 
   
 0.856
Lcho_3778
PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: mpt:Mpe_A2432 putative sulfur oxidation signal peptide protein; Belongs to the 5'-nucleotidase family.
 
   
 0.826
Lcho_3776
PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dar:Daro_4041 YeeE/YedE.
 
     0.752
Lcho_3773
PFAM: Domain of unknown function DUF1791; KEGG: reh:H16_A3567 conserved hypothetical secreted protein.
 
     0.743
Lcho_1941
PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pol:Bpro_1987 protein of unknown function DUF395, YeeE/YedE.
  
     0.725
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.