STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3810Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_3039 transcriptional regulator, LysR family. (312 aa)    
Predicted Functional Partners:
Lcho_4296
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_1765 transcriptional regulator, LysR family.
  
     0.570
Lcho_3809
Gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: bxe:Bxe_B1050 gamma-glutamyltransferase.
       0.561
Lcho_4269
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_0733 transcriptional regulator, LysR family.
  
     0.537
Lcho_0403
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_1453 transcriptional regulator, LysR family.
  
     0.503
Lcho_3811
KEGG: mpt:Mpe_A0118 hypothetical protein.
       0.497
Lcho_0835
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_A4487 transcriptional regulator, LysR family.
  
     0.448
Lcho_0925
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_0158 transcriptional regulator, LysR family.
  
     0.445
Lcho_2459
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_0756 transcriptional regulator, LysR family.
  
     0.427
Lcho_0112
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A3294 LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.407
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.