STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3851TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: vei:Veis_4977 40-residue YVTN family beta-propeller repeat protein. (334 aa)    
Predicted Functional Partners:
Lcho_1789
KEGG: mpt:Mpe_A0480 cytochrome c550.
 
   0.837
pqqE
Coenzyme PQQ biosynthesis protein E; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ).
 
  
 0.812
Lcho_1795
KEGG: pna:Pnap_0722 hypothetical protein.
 
  
 0.803
Lcho_1811
TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: mpt:Mpe_A0473 quinoprotein ethanol dehydrogenase, putative.
 
    0.786
Lcho_1796
PFAM: ABC-2 type transporter; KEGG: mpt:Mpe_A2590 efflux ABC transporter, permease protein.
 
   
 0.782
Lcho_3106
TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: mpt:Mpe_A3393 putative methanol dehydrogenase protein, large subunit.
 
    0.781
Lcho_0849
PFAM: Pyrrolo-quinoline quinone; KEGG: bbt:BBta_2326 putative quinoprotein.
 
    0.779
Lcho_0851
PFAM: Pyrrolo-quinoline quinone; KEGG: mpt:Mpe_A1595 putative alcohol dehydrogenase.
 
    0.779
Lcho_1788
KEGG: mpt:Mpe_A0481 periplasmic binding protein, putative.
 
     0.744
Lcho_3111
PFAM: Sulphur oxidation protein SoxZ; KEGG: mpt:Mpe_A2085 hypothetical protein.
 
     0.741
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.