STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3857PFAM: YaeQ family protein; KEGG: mfa:Mfla_0160 YaeQ. (184 aa)    
Predicted Functional Partners:
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
    0.814
Lcho_4195
PFAM: protein of unknown function DUF45; KEGG: mpt:Mpe_A1039 hypothetical protein.
 
    0.571
Lcho_3856
KEGG: pol:Bpro_2130 antibiotic biosynthesis monooxygenase.
       0.548
Lcho_1658
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
   
    0.503
Lcho_2810
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
   
    0.503
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
       0.484
Lcho_3496
KEGG: mpt:Mpe_A3231 hypothetical protein.
   
    0.470
Lcho_0600
KEGG: mpt:Mpe_A0648 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; Belongs to the peptidase S26 family.
   
    0.465
Lcho_2522
PFAM: RNA-binding S4 domain protein; KEGG: bmu:Bmul_2211 hypothetical protein.
 
    0.464
Lcho_4229
PFAM: Sporulation domain protein; KEGG: mpt:Mpe_A0152 hypothetical protein.
  
    0.463
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.