STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3883Hypothetical protein; KEGG: tbd:Tbd_1299 probable prolin-rich transmembrane protein. (206 aa)    
Predicted Functional Partners:
Lcho_3881
KEGG: tbd:Tbd_1296 hypothetical protein.
 
     0.954
Lcho_3882
KEGG: ppf:Pput_2291 hypothetical protein.
 
     0.953
Lcho_3885
Conserved hypothetical protein; KEGG: mfa:Mfla_2413 methylation.
 
     0.950
Lcho_3887
KEGG: ppu:PP_3475 hypothetical protein.
 
     0.950
Lcho_3884
PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: tbd:Tbd_1300 type II secretion system protein D; Belongs to the bacterial secretin family.
 
     0.949
Lcho_3886
PFAM: type II secretion system protein G; KEGG: tbd:Tbd_1441 type II secretion system protein G.
 
     0.934
Lcho_3880
PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: tbd:Tbd_1295 type II secretion system protein.
 
     0.843
Lcho_2616
KEGG: pfo:Pfl_1984 fimbrial assembly.
 
     0.805
Lcho_2619
PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; Tetratricopeptide TPR_2 repeat protein; KEGG: rso:RSc2303 probable GspD-related protein.
 
     0.798
Lcho_2622
KEGG: mfa:Mfla_2411 hypothetical protein.
 
     0.790
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.