STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3889PFAM: Extracellular ligand-binding receptor; KEGG: pfo:Pfl_1979 cytochrome c, putative. (541 aa)    
Predicted Functional Partners:
Lcho_3890
PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN2852 SCO1/SenC family protein.
 
     0.924
Lcho_3892
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: cytochrome d1 heme region; KEGG: pfo:Pfl_1976 hypothetical protein.
 
    0.918
Lcho_3893
KEGG: pfo:Pfl_1975 hypothetical protein.
 
    0.879
Lcho_3891
PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN2853 Sco1/SenC family protein.
 
     0.863
Lcho_3888
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pfo:Pfl_1980 PpiC-type peptidyl-prolyl cis-trans isomerase.
       0.773
Lcho_2625
KEGG: neu:NE0315 possible multicopper oxidase.
 
    0.769
Lcho_3666
KEGG: neu:NE0315 possible multicopper oxidase.
 
    0.769
Lcho_2626
KEGG: ppf:Pput_2282 40-residue YVTN family beta-propeller repeat protein.
 
    0.753
Lcho_0650
PFAM: cytochrome c class I; electron transport protein SCO1/SenC; KEGG: pfo:Pfl_2002 electron transport protein SCO1/SenC.
  
     0.741
Lcho_2629
KEGG: ppf:Pput_2366 hypothetical protein.
  
     0.699
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.