STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4061PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: art:Arth_3251 glyoxalase/bleomycin resistance protein/dioxygenase. (126 aa)    
Predicted Functional Partners:
Lcho_4064
TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: azo:azo3884 hypothetical regulatory protein.
 
     0.711
Lcho_4062
PFAM: OmpA/MotB domain protein; KEGG: nwi:Nwi_3028 OmpA/MotB.
       0.655
Lcho_4063
SMART: protein phosphatase 2C domain protein; KEGG: azo:azo3885 putative phosphoprotein phosphatase.
       0.655
Lcho_1958
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: mpt:Mpe_A0029 PhnB protein.
 
  
 0.556
Lcho_2129
PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: chy:CHY_2596 putative nitrate reductase.
  
    0.537
Lcho_2176
ATP-dependent transcriptional regulator, MalT-like, LuxR family; PFAM: regulatory protein LuxR; KEGG: bps:BPSS2291 GerE family regulatory protein.
  
     0.528
Lcho_1821
PFAM: GYD family protein; KEGG: reh:H16_B1698 hypothetical protein.
  
     0.509
Lcho_2298
Animal haem peroxidase; PFAM: Hemolysin-type calcium-binding region; Animal haem peroxidase; KEGG: ppu:PP_2561 secreted hemolysin-type calcium-binding bacteriocin, putative.
  
     0.478
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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