STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4062PFAM: OmpA/MotB domain protein; KEGG: nwi:Nwi_3028 OmpA/MotB. (200 aa)    
Predicted Functional Partners:
Lcho_4064
TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: azo:azo3884 hypothetical regulatory protein.
 
     0.815
Lcho_4063
SMART: protein phosphatase 2C domain protein; KEGG: azo:azo3885 putative phosphoprotein phosphatase.
       0.778
Lcho_2634
PFAM: OmpA/MotB domain protein; KEGG: rpd:RPD_1877 OmpA/MotB.
  
     0.761
Lcho_4061
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: art:Arth_3251 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.655
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
     0.596
Lcho_0859
KEGG: pdi:BDI_2988 periplasmic component of the Tol biopolymer transport system.
 
 
 0.574
Lcho_4056
TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: azo:azo3891 hypothetical protein.
 
 
 0.559
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.554
Lcho_3055
PFAM: OmpA/MotB domain protein; KEGG: dsh:Dshi_2548 hypothetical protein.
  
     0.539
Lcho_1973
PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: mpt:Mpe_A2530 membrane-bound lytic murein transglycosylase D, putative.
 
 
 0.536
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.