STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4081Methyltransferase type 12; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: azo:azo3907 hypothetical protein. (456 aa)    
Predicted Functional Partners:
Lcho_4080
TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; Gp5 domain protein; KEGG: pae:PA0095 hypothetical protein.
 
     0.642
Lcho_4082
Hypothetical protein; KEGG: plu:plu0964 insecticidal toxin complex protein TccC5.
       0.603
Lcho_4085
TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: azo:azo3902 putative cytoplasmic protein, SciB.
 
     0.587
Lcho_4087
TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: azo:azo3900 putative cytoplasmic protein, SciD.
 
     0.563
Lcho_4072
KEGG: hch:HCH_04281 hypothetical protein.
   
   0.553
Lcho_4086
TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: azo:azo3901 putative cytoplasmic protein, SciC.
 
     0.550
Lcho_4084
Type VI secretion ATPase, ClpV1 family; KEGG: azo:azo3903 putative ATP-dependent Clp protease, ATP-binding subunit ClpB; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.
 
     0.544
Lcho_4078
KEGG: mxa:MXAN_7133 hypothetical protein.
       0.532
Lcho_4079
KEGG: hch:HCH_07060 hypothetical protein.
       0.532
Lcho_2563
PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: mpt:Mpe_A2492 adenylate cyclase family 3-like protein.
  
  
 0.526
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.