STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4092TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein; KEGG: xcv:XCV4202 hypothetical protein. (345 aa)    
Predicted Functional Partners:
Lcho_4091
TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: azo:azo3895 putative cytoplasmic protein,SciH.
 
  
 0.988
Lcho_4085
TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: azo:azo3902 putative cytoplasmic protein, SciB.
 
  
 0.981
Lcho_4089
PFAM: protein of unknown function DUF796; KEGG: azo:azo3897 putative cytoplasmic protein,SciM.
 
  
 0.974
Lcho_4090
TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: azo:azo3896 putative cytoplasmic protein, SciI.
 
  
 0.963
Lcho_4056
TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: azo:azo3891 hypothetical protein.
 
  
 0.929
Lcho_4080
TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; Gp5 domain protein; KEGG: pae:PA0095 hypothetical protein.
 
  
 0.928
Lcho_4086
TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: azo:azo3901 putative cytoplasmic protein, SciC.
 
  
 0.922
Lcho_4087
TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: azo:azo3900 putative cytoplasmic protein, SciD.
 
  
 0.922
Lcho_4084
Type VI secretion ATPase, ClpV1 family; KEGG: azo:azo3903 putative ATP-dependent Clp protease, ATP-binding subunit ClpB; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.
 
  
 0.901
Lcho_4055
TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: bbr:BB0814 hypothetical protein.
 
  
 0.891
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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