STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4095PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sus:Acid_6889 tetratricopeptide TPR_2 repeat protein. (729 aa)    
Predicted Functional Partners:
Lcho_4094
PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: pna:Pnap_3704 polypeptide-transport-associated domain protein, ShlB-type.
 
     0.809
Lcho_4093
TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: xac:XAC4113 YapH protein.
 
     0.798
Lcho_4092
TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein; KEGG: xcv:XCV4202 hypothetical protein.
 
     0.554
Lcho_4096
Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A1150 signal transduction histidine kinase-like protein.
       0.512
Lcho_4097
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: rfr:Rfer_2039 two component transcriptional regulator, LuxR family.
       0.512
Lcho_1807
PFAM: WD-40 repeat protein; KEGG: amr:AM1_4989 WD-repeat protein.
     0.448
Lcho_3286
NTPase (NACHT family)-like protein; KEGG: sco:SCO3372 large ATP-binding protein.
  
     0.425
Lcho_4091
TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: azo:azo3895 putative cytoplasmic protein,SciH.
       0.409
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.