STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4099Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pol:Bpro_4219 transcriptional regulator, Crp/Fnr family. (237 aa)    
Predicted Functional Partners:
Lcho_2391
PFAM: cyclic nucleotide-binding; KEGG: afw:Anae109_3203 cyclic nucleotide-binding protein.
  
  
  0.970
Lcho_4140
PFAM: cyclic nucleotide-binding; KEGG: dac:Daci_5739 cyclic nucleotide-binding protein.
  
  
 
0.928
Lcho_0179
PFAM: cyclic nucleotide-binding; KEGG: mpt:Mpe_A3813 cAMP-dependent protein kinase - catabolite gene activator and regulatory subunit.
  
  
  0.922
Lcho_3433
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pol:Bpro_0605 transcriptional regulator, Crp/Fnr family.
  
  
 0.922
Lcho_0755
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mpt:Mpe_A1119 catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein).
  
  
 
0.918
Lcho_3585
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: ajs:Ajs_3105 putative transcriptional regulator, Crp/Fnr family.
  
  
 
0.914
Lcho_4100
PFAM: Tetratricopeptide TPR_4; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bbt:BBta_6648 putative adenylate cyclase.
 
 
 0.804
Lcho_2563
PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: mpt:Mpe_A2492 adenylate cyclase family 3-like protein.
 
 
 0.737
Lcho_1454
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: ajs:Ajs_1904 putative transcriptional regulator, Crp/Fnr family.
  
   
 0.691
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.690
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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