STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4100PFAM: Tetratricopeptide TPR_4; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bbt:BBta_6648 putative adenylate cyclase. (1377 aa)    
Predicted Functional Partners:
Lcho_4101
KEGG: dra:DR_A0144 hypothetical protein.
     
 0.820
Lcho_4102
Peroxidase; KEGG: sma:SAV3599 peroxidase.
 
     0.819
Lcho_4099
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pol:Bpro_4219 transcriptional regulator, Crp/Fnr family.
 
 
 0.804
Lcho_4103
PFAM: Patatin; KEGG: pmy:Pmen_2024 patatin.
       0.778
Lcho_4069
PAS/PAC sensor hybrid histidine kinase; KEGG: azo:azo2482 putative hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.734
Lcho_0055
Putative sensor with HAMP domain; PFAM: GAF domain protein; histidine kinase HAMP region domain protein; KEGG: bja:blr2862 two-component hybrid sensor and regulator.
 
  
 0.723
Lcho_4231
PFAM: cyclic nucleotide-binding; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: mpt:Mpe_A0154 serine/threonine-protein kinase.
 
 0.709
Lcho_1464
Multi-sensor hybrid histidine kinase; KEGG: aha:AHA_2188 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein.
  
 
 0.707
Lcho_4098
PFAM: regulatory protein LuxR; KEGG: pol:Bpro_4220 transcriptional regulator, LuxR family.
   
 
 0.693
Lcho_3543
Multi-sensor hybrid histidine kinase; KEGG: cvi:CV_3503 probable sensor/response regulator hybrid; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
   
 
 0.690
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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