STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4102Peroxidase; KEGG: sma:SAV3599 peroxidase. (494 aa)    
Predicted Functional Partners:
Lcho_4100
PFAM: Tetratricopeptide TPR_4; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bbt:BBta_6648 putative adenylate cyclase.
 
     0.819
Lcho_4101
KEGG: dra:DR_A0144 hypothetical protein.
       0.790
Lcho_4103
PFAM: Patatin; KEGG: pmy:Pmen_2024 patatin.
       0.778
Lcho_4099
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pol:Bpro_4219 transcriptional regulator, Crp/Fnr family.
       0.613
Lcho_1994
PFAM: protein of unknown function DUF461; KEGG: dac:Daci_2890 protein of unknown function DUF461.
  
    0.592
Lcho_1996
PFAM: protein of unknown function DUF461; KEGG: dac:Daci_2688 protein of unknown function DUF461.
  
    0.592
Lcho_4263
KEGG: rpe:RPE_4585 hypothetical protein.
  
     0.538
Lcho_0961
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: mpt:Mpe_A2241 P-protein (bifunctional includes: chorismate mutase and prephenate dehydratase).
     
 0.507
Lcho_4098
PFAM: regulatory protein LuxR; KEGG: pol:Bpro_4220 transcriptional regulator, LuxR family.
       0.502
tatB
Twin-arginine translocation protein, TatB subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
  
  
 0.467
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.